Erick Matsen   Teaching

Welcome to the phylogenetics module of Genome Sciences 541.

After this course, I hope you will be able to

Prerequisites

Software prerequisites

Day 1: Phylogenetics motivation and intro

Day 2: Phylogenetics methods

Homework 1

Day 3: Sequence alignment, recombination and trees as data structures

Day 4: Further topics

Homework 2

Do the following in a script, either submitting both the script and the output, or a Jupyter notebook that has been run from scratch (“Restart & Run All”) and exported to PDF. PDF is best, but if you encounter problems with the PDF export you may submit (in order of preference) HTML or the .ipynb file.


Books

Introductory lecture series

Software