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convex_taxids

convex_taxids determines convex tax_ids per-rank in a refpkg.

usage: convex_taxids -c my.refpkg

Options

-c Reference package path. Required.
-o Specify the filename to write to.
--out-dir Specify the directory to write files to.
--prefix Specify a string to be prepended to filenames.
--no-csv Output the results as a padded matrix instead of csv.