error finds the error between two placefiles.
usage: error [options] experimental.jplace expected.jplace
| --pp | Use posterior probability for the weight. |
| -o | Specify the filename to write to. |
| --out-dir | Specify the directory to write files to. |
| --prefix | Specify a string to be prepended to filenames. |
| --csv | Output the results as csv instead of a padded matrix. |
| --include-pendant | |
| Include pendant branch lengths in distance calculations. | |
| --scale-experimental-bl | |
| Scale the branch lengths in the experimental jplace file. | |