:tocdepth: 3 .. _guppy_error: ===== error ===== `error` finds the error between two placefiles. :: usage: error [options] experimental.jplace expected.jplace Options ======= --pp Use posterior probability for the weight. -o Specify the filename to write to. --out-dir Specify the directory to write files to. --prefix Specify a string to be prepended to filenames. --csv Output the results as csv instead of a padded matrix. --include-pendant Include pendant branch lengths in distance calculations. --scale-experimental-bl Scale the branch lengths in the experimental jplace file.