mcl

mcl cluster pqueries using Markov clustering via MCL.

usage: mcl [options] placefile

Options

-o	Specify the filename to write to.
--out-dir	Specify the directory to write files to.
--prefix	Specify a string to be prepended to filenames.
--csv	Output the results as csv instead of a padded matrix.
--pp	Use posterior probability for the weight.
--inflation	If specified, pass this as the inflation value to MCL.

Details

Markov clustering done via the Markov Clustering Library MCL on the overlap graph (see the ograph documentation for information about the overlap graph).