:tocdepth: 3

.. _guppy_unifrac:

=======
unifrac
=======

`unifrac` calculates unifrac on two or more placefiles.

::

  usage: unifrac 1.jplace 2.jplace [3.jplace [...]]

Options
=======

--point-mass  Treat every pquery as a point mass concentrated on the highest-weight placement.
--pp  Use posterior probability for the weight.
-o  Specify the filename to write to.
--out-dir  Specify the directory to write files to.
--prefix  Specify a string to be prepended to filenames.
--csv  Output the results as csv instead of a padded matrix.
--list-out  Output the KR results as a list rather than a matrix.