:tocdepth: 3

.. _guppy_tog:

===
tog
===

`tog` makes a tree with each of the reads represented as a pendant edge.

::

  usage: tog [options] placefile[s]

Options
=======

--pp  Use posterior probability for the weight.
-o  Specify the filename to write to.
--out-dir  Specify the directory to write files to.
--prefix  Specify a string to be prepended to filenames.
--xml  Write phyloXML (with colors) for all visualizations.
--node-numbers  Put the node numbers in where the bootstraps usually go.

Details
=======

Only the best placement is used.