:tocdepth: 3

.. _guppy_sing:

====
sing
====

`sing` makes one tree for each query sequence, showing uncertainty.

::

  usage: sing [options] placefile[s]

Options
=======

--point-mass  Treat every pquery as a point mass concentrated on the highest-weight placement.
--pp  Use posterior probability for the weight.
-o  Specify the filename to write to.
--out-dir  Specify the directory to write files to.
--prefix  Specify a string to be prepended to filenames.
--min-fat  The minimum branch length for fattened edges (to increase their visibility). To turn off set to 0. Default: 0.01
--total-width  Set the total pixel width for all of the branches of the tree. Default: 300
--width-factor  Override total-width by directly setting the number of pixels per unit of thing displayed.
--node-numbers  Put the node numbers in where the bootstraps usually go.
--xml  Write phyloXML (with colors) for all visualizations.
--node-numbers  Put the node numbers in where the bootstraps usually go.

Details
=======

Only suggested for detailed analysis of a few sequences: because this makes one tree per query sequence, it can easily make very big files.